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| 1st(1st leg) | Spartak Moskva | - | Kamen Ingrad | 4:1 (1:0) | ||
| 2nd (2nd leg) | Kamen Ingrad | - | Spartak Moskva | 0:1 (0:1) | ||
| 1st(1st leg): 03/07/2004 14:00 | 2nd (2nd leg): 10/07/2004 18:00 | Winner: Spartak Moskva | ||||
| 1st(1st leg) | VfL Wolfsburg | - | FC Thun | 2:3 (0:1) | ||
| 2nd (2nd leg) | FC Thun | - | VfL Wolfsburg | 4:1 (4:0) | ||
| 1st(1st leg): 03/07/2004 14:30 | 2nd (2nd leg): 11/07/2004 16:00 | Winner: FC Thun | ||||
| 1st(1st leg) | Hibernian FC | - | FK Vetra | 1:1 (0:0) | ||
| 2nd (2nd leg) | FK Vetra | - | Hibernian FC | 1:0 (0:0) | ||
| 1st(1st leg): 03/07/2004 15:00 | 2nd (2nd leg): 10/07/2004 16:00 | Winner: FK Vetra | ||||
| 1st(1st leg) | Esbjerg fB | - | OGC Nice | 1:0 (1:0) | ||
| 2nd (2nd leg) | OGC Nice | - | Esbjerg fB | 1:1 (1:0) | ||
| 1st(1st leg): 03/07/2004 15:00 | 2nd (2nd leg): 11/07/2004 17:00 | Winner: Esbjerg fB | ||||
| 1st(1st leg) | FK Teplice | - | Shinnik Yaroslavl | 1:2 (1:2) | ||
| 2nd (2nd leg) | Shinnik Yaroslavl | - | FK Teplice | 2:0 (1:0) | ||
| 1st(1st leg): 03/07/2004 16:00 | 2nd (2nd leg): 10/07/2004 16:00 | Winner: Shinnik Yaroslavl | ||||
| 1st(1st leg) | ZTS Dubnica | - | Slovan Liberec | 1:2 (0:1) | ||
| 2nd (2nd leg) | Slovan Liberec | - | ZTS Dubnica | 5:0 (3:0) | ||
| 1st(1st leg): 03/07/2004 16:00 | 2nd (2nd leg): 10/07/2004 18:00 | Winner: Slovan Liberec | ||||
| 1st(1st leg) | Slaven Belupo | - | FK Vllaznia | 2:0 (1:0) | ||
| 2nd (2nd leg) | FK Vllaznia | - | Slaven Belupo | 1:0 (1:0) | ||
| 1st(1st leg): 03/07/2004 16:00 | 2nd (2nd leg): 11/07/2004 17:00 | Winner: Slaven Belupo | ||||
| 1st(1st leg) | Vardar Skopje | - | KAA Gent | 1:0 (0:0) | ||
| 2nd (2nd leg) | KAA Gent | - | Vardar Skopje | 3:4 (0:0, 1:0, 1:0) pso | ||
| 1st(1st leg): 03/07/2004 17:00 | 2nd (2nd leg): 10/07/2004 19:00 | Winner: Vardar Skopje | ||||
| 1st(1st leg) | Spartak Trnava | - | Sloboda Tuzla | 2:1 (0:0) | ||
| 2nd (2nd leg) | Sloboda Tuzla | - | Spartak Trnava | 0:1 (0:0) | ||
| 1st(1st leg): 03/07/2004 18:00 | 2nd (2nd leg): 10/07/2004 17:30 | Winner: Spartak Trnava | ||||
| 1st(1st leg) | NEC Nijmegen | - | Cork City | 0:0 (0:0) | ||
| 2nd (2nd leg) | Cork City | - | NEC Nijmegen | 1:0 (0:0) | ||
| 1st(1st leg): 03/07/2004 18:30 | 2nd (2nd leg): 11/07/2004 15:30 | Winner: Cork City | ||||
| 1st(1st leg) | KVC Westerlo | - | Tescoma Zlín | 0:0 (0:0) | ||
| 2nd (2nd leg) | Tescoma Zlín | - | KVC Westerlo | 3:0 (2:0) | ||
| 1st(1st leg): 03/07/2004 19:00 | 2nd (2nd leg): 10/07/2004 18:30 | Winner: Tescoma Zlín | ||||
| 1st(1st leg) | Odense BK | - | Villarreal CF | 0:3 (0:0) | ||
| 2nd (2nd leg) | Villarreal CF | - | Odense BK | 2:0 (2:0) | ||
| 1st(1st leg): 03/07/2004 19:00 | 2nd (2nd leg): 10/07/2004 21:00 | Winner: Villarreal CF | ||||
| 1st(1st leg) | Dinamo Minsk | - | FK Smederevo | 1:2 (0:1) | ||
| 2nd (2nd leg) | FK Smederevo | - | Dinamo Minsk | 1:3 (0:1, 1:2) aet | ||
| 1st(1st leg): 04/07/2004 16:00 | 2nd (2nd leg): 11/07/2004 15:30 | Winner: Dinamo Minsk | ||||
| 1st(1st leg) | OFK Beograd | - | FC Dinaburg | 3:1 (2:1) | ||
| 2nd (2nd leg) | FC Dinaburg | - | OFK Beograd | 0:2 (0:0) | ||
| 1st(1st leg): 04/07/2004 16:30 | 2nd (2nd leg): 10/07/2004 16:00 | Winner: OFK Beograd | ||||
| 1st(1st leg) | KRC Genk | - | Marek Dupnitza | 2:1 (1:0) | ||
| 2nd (2nd leg) | Marek Dupnitza | - | KRC Genk | 0:3 dec. | ||
| 1st(1st leg): 04/07/2004 17:00 | 2nd (2nd leg): 10/07/2004 16:00 | Winner: KRC Genk | ||||
| 1st(1st leg) | Tampere United | - | Inter Baku | 3:0 (1:0) | ||
| 2nd (2nd leg) | Inter Baku | - | Tampere United | 1:0 (0:0) | ||
| 1st(1st leg): 04/07/2004 17:00 | 2nd (2nd leg): 10/07/2004 15:00 | Winner: Tampere United | ||||
