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| 21/09/2016 | 10:00 | SKA-Khabarovsk | - | Spartak Moskva | 1:0 (0:0) | |
| 11:00 | Sibir Novosibirsk | - | FK Tom Tomsk | 1:0 (0:0, 0:0) aet | ||
| 12:00 | FK Chelyabinsk | - | FK Ural | 0:3 (0:2) | ||
| 12:00 | Dinamo Moskva | - | FK Rostov | 4:0 (3:0) | ||
| 13:00 | Enisey Krasnoyarsk | - | CSKA Moskva | 2:1 (1:0) | ||
| 15:00 | Volga Ulyanovsk | - | FK Amkar Perm | 3:4 (0:0, 0:0, 0:0) pso | ||
| 15:00 | Spartak Nalchik | - | FK Krasnodar | 0:2 (0:0) | ||
| 16:00 | Volgar Astrakhan | - | FK Orenburg | 0:1 (0:0) | ||
| 16:30 | Mordovia Saransk | - | Anzhi Makhachkala | 1:2 (0:2) | ||
| 16:30 | FK Tosno | - | Arsenal Tula | 2:0 (1:0) | ||
| 17:00 | Fakel Voronezh | - | Terek Grozny | 3:5 (1:0, 1:1, 1:1) pso | ||
| 17:00 | FC Energomash Belgorod | - | FK Ufa | 3:5 (1:1, 1:1, 1:1) pso | ||
| 18:00 | FK Khimki | - | Lokomotiv Moskva | 0:3 (0:1) | ||
| 22/09/2016 | 09:00 | FK Chita | - | Rubin Kazan | 0:1 (0:1) | |
| 12:00 | FK Tambov | - | Zenit St. Petersburg | 0:5 (0:1) | ||
| 16:30 | Shinnik Yaroslavl | - | Krylia Sovetov | 0:2 (0:1) |
