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| 30/04/2004 | 18:00 | Eintracht Braunschweig | - | Werder Bremen II | 2:1 (1:0) | |
| 01/05/2004 | 13:00 | Hamburger SV II | - | SC Paderborn 07 | 1:1 (1:0) | |
| 13:00 | Holstein Kiel | - | Chemnitzer FC | 3:0 (2:0) | ||
| 13:00 | Preußen Münster | - | Rot-Weiss Essen | 1:3 (0:1) | ||
| 13:00 | KFC Uerdingen 05 | - | VfR Neumünster | 3:0 (1:0) | ||
| 13:00 | SG Wattenscheid 09 | - | 1. FC Köln II | 2:4 (1:1) | ||
| 13:00 | Wuppertaler SV | - | FC Schalke 04 II | 1:1 (1:0) | ||
| 02/05/2004 | 13:00 | FC St. Pauli | - | Sachsen Leipzig | 1:1 (0:1) | |
| 13:00 | Dynamo Dresden | - | Borussia Dortmund II | 3:1 (2:1) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Rot-Weiss Essen | 29 | 18 | 5 | 6 | 58:23 | 35 | 59 |
| 2 |
|
Dynamo Dresden | 29 | 14 | 11 | 4 | 40:24 | 16 | 53 |
| 3 |
|
Wuppertaler SV | 29 | 15 | 8 | 6 | 41:30 | 11 | 53 |
| 4 |
|
Werder Bremen II | 29 | 15 | 7 | 7 | 51:34 | 17 | 52 |
| 5 |
|
SC Paderborn 07 | 29 | 14 | 10 | 5 | 42:32 | 10 | 52 |
| 6 |
|
KFC Uerdingen 05 | 29 | 12 | 6 | 11 | 42:37 | 5 | 42 |
| 7 |
|
Eintracht Braunschweig | 29 | 12 | 6 | 11 | 36:34 | 2 | 42 |
| 8 |
|
Chemnitzer FC | 29 | 12 | 4 | 13 | 28:34 | -6 | 40 |
| 9 |
|
Borussia Dortmund II | 29 | 11 | 6 | 12 | 38:39 | -1 | 39 |
| 10 |
|
FC St. Pauli | 29 | 10 | 7 | 12 | 39:32 | 7 | 37 |
| 11 |
|
Holstein Kiel | 29 | 9 | 8 | 12 | 43:47 | -4 | 35 |
| 12 |
|
FC Schalke 04 II | 29 | 9 | 8 | 12 | 42:52 | -10 | 35 |
| 13 |
|
1. FC Köln II | 29 | 8 | 10 | 11 | 44:47 | -3 | 34 |
| 14 |
|
SG Wattenscheid 09 | 29 | 9 | 7 | 13 | 43:53 | -10 | 34 |
| 15 |
|
Hamburger SV II | 29 | 7 | 10 | 12 | 24:43 | -19 | 31 |
| 16 |
|
Preußen Münster | 29 | 6 | 11 | 12 | 31:41 | -10 | 29 |
| 17 |
|
Sachsen Leipzig | 29 | 4 | 12 | 13 | 32:43 | -11 | 24 |
| 18 |
|
VfR Neumünster | 29 | 3 | 10 | 16 | 28:57 | -29 | 19 |
