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| 26/11/2016 | 15:00 | AFC Wimbledon | - | Fleetwood Town | 2:2 (0:1) | |
| 15:00 | Bury FC | - | Millwall FC | 2:3 (0:0) | ||
| 15:00 | Charlton Athletic | - | Sheffield United | 1:1 (0:1) | ||
| 15:00 | Chesterfield FC | - | Bristol Rovers | 3:2 (2:1) | ||
| 15:00 | Coventry City | - | Milton Keynes Dons | 1:2 (1:1) | ||
| 15:00 | Gillingham FC | - | Rochdale AFC | 3:0 (0:0) | ||
| 15:00 | Northampton Town | - | Bolton Wanderers | 0:1 (0:1) | ||
| 15:00 | Scunthorpe United | - | Oxford United | 1:1 (1:0) | ||
| 15:00 | Shrewsbury Town | - | Port Vale FC | 0:0 (0:0) | ||
| 15:00 | Swindon Town | - | Bradford City | 1:0 (1:0) | ||
| 15:00 | Walsall FC | - | Southend United | 0:0 (0:0) | ||
| 24/01/2017 | 19:45 | Oldham Athletic | - | Peterborough United | 2:0 (0:0) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Scunthorpe United | 20 | 13 | 5 | 2 | 41:17 | 24 | 44 |
| 2 |
|
Bolton Wanderers | 20 | 12 | 4 | 4 | 24:12 | 12 | 40 |
| 3 |
|
Sheffield United | 20 | 11 | 5 | 4 | 34:22 | 12 | 38 |
| 4 |
|
Bradford City | 20 | 9 | 8 | 3 | 27:18 | 9 | 35 |
| 5 |
|
Millwall FC | 20 | 9 | 4 | 7 | 35:32 | 3 | 31 |
| 6 |
|
Rochdale AFC | 20 | 9 | 3 | 8 | 27:25 | 2 | 30 |
| 7 |
|
AFC Wimbledon | 20 | 7 | 8 | 5 | 30:24 | 6 | 29 |
| 8 |
|
Fleetwood Town | 20 | 8 | 5 | 7 | 31:26 | 5 | 29 |
| 9 |
|
Peterborough United | 20 | 8 | 5 | 7 | 28:23 | 5 | 29 |
| 10 |
|
Southend United | 20 | 7 | 7 | 6 | 26:27 | -1 | 28 |
| 11 |
|
Charlton Athletic | 20 | 6 | 9 | 5 | 27:22 | 5 | 27 |
| 12 |
|
Port Vale FC | 20 | 7 | 6 | 7 | 24:29 | -5 | 27 |
| 13 |
|
Bristol Rovers | 20 | 7 | 6 | 7 | 29:35 | -6 | 27 |
| 14 |
|
Oxford United | 20 | 7 | 5 | 8 | 24:24 | 0 | 26 |
| 15 |
|
Gillingham FC | 20 | 7 | 5 | 8 | 29:32 | -3 | 26 |
| 16 |
|
Walsall FC | 20 | 6 | 8 | 6 | 23:28 | -5 | 26 |
| 17 |
|
Northampton Town | 20 | 6 | 6 | 8 | 28:28 | 0 | 24 |
| 18 |
|
Swindon Town | 20 | 6 | 5 | 9 | 21:28 | -7 | 23 |
| 19 |
|
Milton Keynes Dons | 20 | 5 | 6 | 9 | 25:30 | -5 | 21 |
| 20 |
|
Oldham Athletic | 20 | 4 | 8 | 8 | 13:21 | -8 | 20 |
| 21 |
|
Bury FC | 20 | 6 | 2 | 12 | 28:38 | -10 | 20 |
| 22 |
|
Coventry City | 20 | 4 | 7 | 9 | 17:25 | -8 | 19 |
| 23 |
|
Chesterfield FC | 20 | 5 | 3 | 12 | 24:34 | -10 | 18 |
| 24 |
|
Shrewsbury Town | 20 | 3 | 6 | 11 | 19:34 | -15 | 15 |
| Promotion | |
| Playoffs | |
| Relegation |
