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| 1st(1st leg) | FK Baku | - | Levski Sofia | 0:0 (0:0) | ||
| 2nd (2nd leg) | Levski Sofia | - | FK Baku | 2:0 (0:0) | ||
| 1st(1st leg): 28/07/2009 16:00 | 2nd (2nd leg): 05/08/2009 18:30 | Winner: Levski Sofia | ||||
| 1st(1st leg) | FK Aktobe | - | Maccabi Haifa | 0:0 (0:0) | ||
| 2nd (2nd leg) | Maccabi Haifa | - | FK Aktobe | 4:3 (2:3) | ||
| 1st(1st leg): 28/07/2009 17:00 | 2nd (2nd leg): 04/08/2009 18:50 | Winner: Maccabi Haifa | ||||
| 1st(1st leg) | AC Sparta Praha | - | Panathinaikos | 3:1 (2:0) | ||
| 2nd (2nd leg) | Panathinaikos | - | AC Sparta Praha | 3:0 (1:0) | ||
| 1st(1st leg): 28/07/2009 19:00 | 2nd (2nd leg): 04/08/2009 19:45 | Winner: Panathinaikos | ||||
| 1st(1st leg) | RSC Anderlecht | - | Sivasspor | 5:0 (3:0) | ||
| 2nd (2nd leg) | Sivasspor | - | RSC Anderlecht | 3:1 (2:1) | ||
| 1st(1st leg): 28/07/2009 19:45 | 2nd (2nd leg): 04/08/2009 19:00 | Winner: RSC Anderlecht | ||||
| 1st(1st leg) | FK Ventspils | - | BATE Borisov | 1:0 (0:0) | ||
| 2nd (2nd leg) | BATE Borisov | - | FK Ventspils | 2:1 (1:1) | ||
| 1st(1st leg): 29/07/2009 16:00 | 2nd (2nd leg): 05/08/2009 17:00 | Winner: FK Ventspils | ||||
| 1st(1st leg) | FC Levadia | - | Debreceni VSC | 0:1 (0:0) | ||
| 2nd (2nd leg) | Debreceni VSC | - | FC Levadia | 1:0 (0:0) | ||
| 1st(1st leg): 29/07/2009 17:00 | 2nd (2nd leg): 05/08/2009 19:00 | Winner: Debreceni VSC | ||||
| 1st(1st leg) | APOEL Nikosia | - | Partizan | 2:0 (0:0) | ||
| 2nd (2nd leg) | Partizan | - | APOEL Nikosia | 1:0 (1:0) | ||
| 1st(1st leg): 29/07/2009 18:00 | 2nd (2nd leg): 05/08/2009 19:45 | Winner: APOEL Nikosia | ||||
| 1st(1st leg) | FC Sheriff | - | Slavia Praha | 0:0 (0:0) | ||
| 2nd (2nd leg) | Slavia Praha | - | FC Sheriff | 1:1 (1:0) | ||
| 1st(1st leg): 29/07/2009 18:00 | 2nd (2nd leg): 05/08/2009 19:00 | Winner: FC Sheriff | ||||
| 1st(1st leg) | Shakhtar Donetsk | - | FC Timişoara | 2:2 (0:1) | ||
| 2nd (2nd leg) | FC Timişoara | - | Shakhtar Donetsk | 0:0 (0:0) | ||
| 1st(1st leg): 29/07/2009 18:00 | 2nd (2nd leg): 05/08/2009 18:30 | Winner: FC Timişoara | ||||
| 1st(1st leg) | Slovan Bratislava | - | Olympiakos Piraeus | 0:2 (0:2) | ||
| 2nd (2nd leg) | Olympiakos Piraeus | - | Slovan Bratislava | 2:0 (1:0) | ||
| 1st(1st leg): 29/07/2009 19:00 | 2nd (2nd leg): 05/08/2009 19:45 | Winner: Olympiakos Piraeus | ||||
| 1st(1st leg) | FC Zürich | - | NK Maribor | 2:3 (2:2) | ||
| 2nd (2nd leg) | NK Maribor | - | FC Zürich | 0:3 (0:2) | ||
| 1st(1st leg): 29/07/2009 19:15 | 2nd (2nd leg): 05/08/2009 19:15 | Winner: FC Zürich | ||||
| 1st(1st leg) | FC København | - | Stabæk IF | 3:1 (2:0) | ||
| 2nd (2nd leg) | Stabæk IF | - | FC København | 0:0 (0:0) | ||
| 1st(1st leg): 29/07/2009 19:15 | 2nd (2nd leg): 05/08/2009 19:45 | Winner: FC København | ||||
| 1st(1st leg) | RB Salzburg | - | Dinamo Zagreb | 1:1 (1:0) | ||
| 2nd (2nd leg) | Dinamo Zagreb | - | RB Salzburg | 1:2 (0:1) | ||
| 1st(1st leg): 29/07/2009 19:30 | 2nd (2nd leg): 04/08/2009 19:15 | Winner: RB Salzburg | ||||
| 1st(1st leg) | Celtic FC | - | Dinamo Moskva | 0:1 (0:1) | ||
| 2nd (2nd leg) | Dinamo Moskva | - | Celtic FC | 0:2 (0:1) | ||
| 1st(1st leg): 29/07/2009 19:45 | 2nd (2nd leg): 05/08/2009 17:00 | Winner: Celtic FC | ||||
| 1st(1st leg) | Sporting CP | - | FC Twente | 0:0 (0:0) | ||
| 2nd (2nd leg) | FC Twente | - | Sporting CP | 1:1 (1:0) | ||
| 1st(1st leg): 29/07/2009 20:45 | 2nd (2nd leg): 04/08/2009 19:45 | Winner: Sporting CP | ||||
