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| 1st(1st leg) | 1. FC Nürnberg | - | Drumcondra Dublin | 5:0 (3:0) | ||
| 2nd (2nd leg) | Drumcondra Dublin | - | 1. FC Nürnberg | 1:4 (1:1) | ||
| 1st(1st leg): 23/08/1961 | 2nd (2nd leg): 13/09/1961 | Winner: 1. FC Nürnberg | ||||
| 1st(1st leg) | ASK Vorwärts Berlin | - | Linfield FC | 3:0 (2:0) | ||
| 2nd (2nd leg) | Linfield FC | - | ASK Vorwärts Berlin | dnp | ||
| 1st(1st leg): 30/08/1961 | 2nd (2nd leg): 20/09/1961 | Winner: ASK Vorwärts Berlin | ||||
| 1st(1st leg) | AS Monaco | - | Rangers FC | 2:3 (0:2) | ||
| 2nd (2nd leg) | Rangers FC | - | AS Monaco | 3:2 (0:1) | ||
| 1st(1st leg): 05/09/1961 | 2nd (2nd leg): 12/09/1961 | Winner: Rangers FC | ||||
| 1st(1st leg) | CDNA Sofia | - | AS Dukla Praha | 4:4 (1:2) | ||
| 2nd (2nd leg) | AS Dukla Praha | - | CDNA Sofia | 2:1 (0:1) | ||
| 1st(1st leg): 06/09/1961 | 2nd (2nd leg): 13/09/1961 | Winner: AS Dukla Praha | ||||
| 1st(1st leg) | IFK Göteborg | - | Feijenoord | 0:3 (0:3) | ||
| 2nd (2nd leg) | Feijenoord | - | IFK Göteborg | 8:2 (4:0) | ||
| 1st(1st leg): 06/09/1961 | 2nd (2nd leg): 13/09/1961 | Winner: Feijenoord | ||||
| 1st(1st leg) | Servette FC | - | Hibernians FC | 5:0 (3:0) | ||
| 2nd (2nd leg) | Hibernians FC | - | Servette FC | 1:2 (0:1) | ||
| 1st(1st leg): 06/09/1961 | 2nd (2nd leg): 20/09/1961 | Winner: Servette FC | ||||
| 1st(1st leg) | Standard Liège | - | Fredrikstad FK | 2:1 (1:0) | ||
| 2nd (2nd leg) | Fredrikstad FK | - | Standard Liège | 0:2 (0:0) | ||
| 1st(1st leg): 06/09/1961 | 2nd (2nd leg): 20/09/1961 | Winner: Standard Liège | ||||
| 1st(1st leg) | Budapesti Vasas | - | Real Madrid | 0:2 (0:2) | ||
| 2nd (2nd leg) | Real Madrid | - | Budapesti Vasas | 3:1 (1:1) | ||
| 1st(1st leg): 06/09/1961 | 2nd (2nd leg): 20/09/1961 | Winner: Real Madrid | ||||
| 1st(1st leg) | Spora Luxemburg | - | B 1913 Odense | 0:6 (0:3) | ||
| 2nd (2nd leg) | B 1913 Odense | - | Spora Luxemburg | 9:2 (2:2) | ||
| 1st(1st leg): 07/09/1961 | 2nd (2nd leg): 13/09/1961 | Winner: B 1913 Odense | ||||
| 1st(1st leg) | Górnik Zabrze | - | Tottenham Hotspur | 4:2 (3:0) | ||
| 2nd (2nd leg) | Tottenham Hotspur | - | Górnik Zabrze | 8:1 (5:1) | ||
| 1st(1st leg): 13/09/1961 | 2nd (2nd leg): 20/09/1961 | Winner: Tottenham Hotspur | ||||
| 1st(1st leg) | Sporting CP | - | Partizan | 1:1 (0:0) | ||
| 2nd (2nd leg) | Partizan | - | Sporting CP | 2:0 (1:0) | ||
| 1st(1st leg): 13/09/1961 | 2nd (2nd leg): 20/09/1961 | Winner: Partizan | ||||
| 1st(1st leg) | Panathinaikos | - | Juventus | 1:1 (0:1) | ||
| 2nd (2nd leg) | Juventus | - | Panathinaikos | 2:1 (2:0) | ||
| 1st(1st leg): 20/09/1961 | 2nd (2nd leg): 27/09/1961 | Winner: Juventus | ||||
| 1st(1st leg) | CSA Steaua București | - | Austria Wien | 0:0 (0:0) | ||
| 2nd (2nd leg) | Austria Wien | - | CSA Steaua București | 2:0 (2:0) | ||
| 1st(1st leg): 21/09/1961 | 2nd (2nd leg): 28/09/1961 | Winner: Austria Wien | ||||
