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| 1st(1st leg) | HNK Orašje | - | NK Travnik | 1:1 (1:0) | ||
| 2nd (2nd leg) | NK Travnik | - | HNK Orašje | 3:1 (1:1) | ||
| 1st(1st leg): 18/10/2016 14:00 | 2nd (2nd leg): 25/10/2016 12:30 | Winner: NK Travnik | ||||
| 1st(1st leg) | FK Mladost Doboj-Kakanj | - | Slavija Sarajevo | 6:1 (5:1) | ||
| 2nd (2nd leg) | Slavija Sarajevo | - | FK Mladost Doboj-Kakanj | 0:2 (0:0) | ||
| 1st(1st leg): 19/10/2016 14:00 | 2nd (2nd leg): 26/10/2016 12:30 | Winner: FK Mladost Doboj-Kakanj | ||||
| 1st(1st leg) | Sloboda Tuzla | - | Široki Brijeg | 1:0 (1:0) | ||
| 2nd (2nd leg) | Široki Brijeg | - | Sloboda Tuzla | 2:0 (0:0) | ||
| 1st(1st leg): 19/10/2016 14:00 | 2nd (2nd leg): 26/10/2016 14:00 | Winner: Široki Brijeg | ||||
| 1st(1st leg) | FK Sarajevo | - | FK Kozara | 3:1 (1:0) | ||
| 2nd (2nd leg) | FK Kozara | - | FK Sarajevo | 0:5 (0:2) | ||
| 1st(1st leg): 19/10/2016 14:00 | 2nd (2nd leg): 26/10/2016 12:30 | Winner: FK Sarajevo | ||||
| 1st(1st leg) | FK Rudar Kakanj | - | Radnik Bijeljina | 0:1 (0:0) | ||
| 2nd (2nd leg) | Radnik Bijeljina | - | FK Rudar Kakanj | 5:1 (3:1) | ||
| 1st(1st leg): 19/10/2016 14:00 | 2nd (2nd leg): 26/10/2016 12:30 | Winner: Radnik Bijeljina | ||||
| 1st(1st leg) | Zrinjski Mostar | - | Velež Mostar | 3:0 (1:0) | ||
| 2nd (2nd leg) | Velež Mostar | - | Zrinjski Mostar | 1:2 (0:2) | ||
| 1st(1st leg): 19/10/2016 15:00 | 2nd (2nd leg): 26/10/2016 12:30 | Winner: Zrinjski Mostar | ||||
| 1st(1st leg) | Željezničar Sarajevo | - | FK Goražde | 5:1 (3:1) | ||
| 2nd (2nd leg) | FK Goražde | - | Željezničar Sarajevo | 0:3 (0:0) | ||
| 1st(1st leg): 19/10/2016 18:00 | 2nd (2nd leg): 26/10/2016 14:00 | Winner: Željezničar Sarajevo | ||||
| 1st(1st leg) | FK Bosna | - | FK Radnički Lukavac | 6:0 (2:0) | ||
| 2nd (2nd leg) | FK Radnički Lukavac | - | FK Bosna | 3:2 (3:1) | ||
| 1st(1st leg): 20/10/2016 14:00 | 2nd (2nd leg): 26/10/2016 12:30 | Winner: FK Bosna | ||||
