| 1. Round | 17/07/2016 | HNK Cibalia | - | Hajduk Split | 0:2 | ||||
| 2. Round | 23/07/2016 | Slaven Belupo | - | HNK Cibalia | 3:2 | ||||
| 3. Round | 30/07/2016 | HNK Cibalia | - | NK Inter Zaprešić | 3:3 | ||||
| 6. Round | 20/08/2016 | HNK Cibalia | - | NK Istra 1961 | 1:1 | ||||
| 7. Round | 27/08/2016 | NK Osijek | - | HNK Cibalia | 2:0 | ||||
| 11. Round | 02/10/2016 | HNK Cibalia | - | Slaven Belupo | 0:0 | ||||
| 12. Round | 15/10/2016 | NK Inter Zaprešić | - | HNK Cibalia | 1:0 | ||||
| 13. Round | 22/10/2016 | Dinamo Zagreb | - | HNK Cibalia | 3:0 | ||||
| 14. Round | 31/10/2016 | HNK Cibalia | - | RNK Split | 1:0 | ||||
| 15. Round | 06/11/2016 | NK Istra 1961 | - | HNK Cibalia | 3:2 | ||||
| 18. Round | 03/12/2016 | HNK Cibalia | - | Lokomotiva Zagreb | 1:4 | ||||
| 19. Round | 10/12/2016 | HNK Cibalia | - | Hajduk Split | 1:2 |  |
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| 22. Round | 26/02/2017 | HNK Cibalia | - | Dinamo Zagreb | 1:2 | ||||
| 25. Round | 18/03/2017 | NK Osijek | - | HNK Cibalia | 2:0 |
Croatia