| 1. Round | 09/08/2024 | SFC Opava [Youth B] | - | FK Pardubice [Youth B] | 3:2 | ||||
| 2. Round | 17/08/2024 | FK Pardubice [Youth B] | - | 1. FC Slovácko [Youth B] | 2:3 | ||||
| 3. Round | 23/08/2024 | FC Zlín [Youth B] | - | FK Pardubice [Youth B] | 2:2 |  |
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| 4. Round | 31/08/2024 | FK Pardubice [Youth B] | - | Sigma Olomouc [Youth B] | 0:1 | ||||
| 7. Round | 21/09/2024 | Dynamo České Budějovice [Youth B] | - | FK Pardubice [Youth B] | 2:0 | ||||
| 10. Round | 12/10/2024 | FK Pardubice [Youth B] | - | Vysočina Jihlava [Youth B] | 5:3 | |
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| 11. Round | 19/10/2024 | FK Mladá Boleslav [Youth B] | - | FK Pardubice [Youth B] | 3:1 | ||||
| 12. Round | 26/10/2024 | AC Sparta Praha [Youth B] | - | FK Pardubice [Youth B] | 4:2 | ||||
| 15. Round | 16/11/2024 | FK Pardubice [Youth B] | - | Slovan Liberec [Youth B] | 1:2 |
Czech Republic