| 1. Round | 01/08/1998 | SD Croatia Berlin | - | 1. FC Magdeburg | 0:2 | ||||
| 2. Round | 08/08/1998 | 1. FC Magdeburg | - | SV Babelsberg 03 | 1:0 |  |
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| 3. Round | 14/08/1998 | VfB Leipzig | - | 1. FC Magdeburg | 1:1 | |
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| 4. Round | 19/08/1998 | 1. FC Magdeburg | - | VFC Plauen | 2:2 | |
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| 5. Round | 22/08/1998 | Dresdner SC | - | 1. FC Magdeburg | 1:1 | ||||
| 6. Round | 02/09/1998 | 1. FC Magdeburg | - | Lok Altmark Stendal | 4:2 | |
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| 7. Round | 13/09/1998 | Rot-Weiß Erfurt | - | 1. FC Magdeburg | 1:1 | ||||
| 8. Round | 19/09/1998 | 1. FC Magdeburg | - | Erzgebirge Aue | 1:0 | ||||
| 9. Round | 27/09/1998 | Spandauer SV | - | 1. FC Magdeburg | 2:1 | ||||
| 10. Round | 11/10/1998 | 1. FC Magdeburg | - | Stahl Eisenhüttenstadt | 3:0 | ||||
| 11. Round | 17/10/1998 | Sachsen Leipzig | - | 1. FC Magdeburg | 1:3 | ||||
| 12. Round | 25/10/1998 | 1. FC Magdeburg | - | Dynamo Dresden | 1:0 | |
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| 13. Round | 07/11/1998 | Chemnitzer FC | - | 1. FC Magdeburg | 1:0 | ||||
| 14. Round | 14/11/1998 | 1. FC Magdeburg | - | FC Berlin | 4:2 | |
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| 15. Round | 22/11/1998 | 1. FC Union Berlin | - | 1. FC Magdeburg | 5:1 | ||||
| 16. Round | 05/12/1998 | FC Carl Zeiss Jena | - | 1. FC Magdeburg | 2:0 | ||||
| 17. Round | 11/12/1998 | 1. FC Magdeburg | - | FSV Zwickau | 2:1 | |
Germany