1. Round | 05/08/2006 | Wuppertaler SV | - | FC St. Pauli | 3:1 | ||||
2. Round | 09/08/2006 | FC St. Pauli | - | Borussia Dortmund II | 2:1 | ||||
8. Round | 15/09/2006 | FC St. Pauli | - | Bayer Leverkusen II | 2:0 | ||||
15. Round | 08/11/2006 | FC St. Pauli | - | VfL Osnabrück | 2:2 | ||||
17. Round | 17/11/2006 | FC St. Pauli | - | Rot-Weiß Erfurt | 1:1 | ||||
18. Round | 25/11/2006 | Dynamo Dresden | - | FC St. Pauli | 3:0 | ||||
19. Round | 02/12/2006 | FC St. Pauli | - | 1. FC Magdeburg | 2:0 | ||||
28. Round | 27/03/2007 | FC St. Pauli | - | Kickers Emden | 2:0 | ||||
38. Round | 02/06/2007 | 1. FC Magdeburg | - | FC St. Pauli | 1:1 |