| 1. Round | 13/07/2012 | MŠK Žilina | - | Spartak Myjava | 4:1 |  |
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| 3. Round | 29/07/2012 | Slovan Bratislava | - | MŠK Žilina | 1:1 | ||||
| 4. Round | 04/08/2012 | MŠK Žilina | - | FK Senica | 2:0 | ||||
| 5. Round | 11/08/2012 | AS Trenčín | - | MŠK Žilina | 0:2 | |
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| 6. Round | 18/08/2012 | MŠK Žilina | - | MFK Ružomberok | 0:0 | ||||
| 2. Round | 21/08/2012 | MŠK Žilina | - | Spartak Trnava | 1:1 | ||||
| 7. Round | 25/08/2012 | Zlaté Moravce | - | MŠK Žilina | 1:0 | ||||
| 9. Round | 16/09/2012 | FK Dukla Banská Bystrica | - | MŠK Žilina | 2:2 | ||||
| 13. Round | 20/10/2012 | Spartak Trnava | - | MŠK Žilina | 1:2 | ||||
| 14. Round | 28/10/2012 | MŠK Žilina | - | Slovan Bratislava | 0:0 | ||||
| 16. Round | 11/11/2012 | MŠK Žilina | - | AS Trenčín | 0:0 |
Portugal