| Group A | 26/10/2016 | PAOK Saloniki | - | AE Lárissa | 2:0 |  |
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| Group A | 01/12/2016 | AO Trikala | - | PAOK Saloniki | 0:0 | ||||
| Group A | 14/12/2016 | Panelefsiniakos Elefsinas | - | PAOK Saloniki | 0:7 | |
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| Round of 16 | 11/01/2017 | Panetolikos | - | PAOK Saloniki | 0:2 |  |
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| Round of 16 | 26/01/2017 | PAOK Saloniki | - | Panetolikos | 4:1 | ||||
| Quarter-finals | 09/02/2017 | Xanthi FC | - | PAOK Saloniki | 1:2 | |
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| Quarter-finals | 02/03/2017 | PAOK Saloniki | - | Xanthi FC | 0:1 |
Greece