| 1. Round | 25/07/2009 | NK Zadar | - | HNK Cibalia | 0:3 | ||||
| 2. Round | 02/08/2009 | HNK Cibalia | - | Slaven Belupo | 2:0 | ||||
| 3. Round | 07/08/2009 | NK Inter Zaprešić | - | HNK Cibalia | 1:0 | ||||
| 4. Round | 15/08/2009 | HNK Cibalia | - | HNK Rijeka | 1:0 |  |
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| 5. Round | 22/08/2009 | Lokomotiva Zagreb | - | HNK Cibalia | 2:0 | ||||
| 6. Round | 29/08/2009 | HNK Cibalia | - | NK Varteks | 4:0 | ||||
| 7. Round | 11/09/2009 | NK Zagreb | - | HNK Cibalia | 0:1 | ||||
| 8. Round | 19/09/2009 | NK Istra 1961 | - | HNK Cibalia | 0:0 | ||||
| 10. Round | 03/10/2009 | HNK Šibenik | - | HNK Cibalia | 0:2 | ||||
| 11. Round | 17/10/2009 | HNK Cibalia | - | NK Karlovac | 2:2 | ||||
| 13. Round | 31/10/2009 | HNK Cibalia | - | NK Međimurje | 3:0 | ||||
| 14. Round | 07/11/2009 | NK Croatia Sesvete | - | HNK Cibalia | 0:3 | ||||
| 15. Round | 21/11/2009 | HNK Cibalia | - | NK Osijek | 1:1 | ||||
| 16. Round | 28/11/2009 | HNK Cibalia | - | NK Zadar | 2:0 | ||||
| 22. Round | 27/03/2010 | HNK Cibalia | - | NK Zagreb | 1:0 | ||||
| 28. Round | 01/05/2010 | NK Međimurje | - | HNK Cibalia | 0:2 | ||||
| 29. Round | 08/05/2010 | HNK Cibalia | - | NK Croatia Sesvete | 5:0 |
Croatia