1. Round | 30/06/2016 | FK Trakai | - | JK Nõmme Kalju | 2:1 | ||||
1. Round | 07/07/2016 | JK Nõmme Kalju | - | FK Trakai | 4:1 | ||||
2. Round | 14/07/2016 | Maccabi Haifa | - | JK Nõmme Kalju | 1:1 | ||||
2. Round | 21/07/2016 | JK Nõmme Kalju | - | Maccabi Haifa | 5:3 pso | ||||
3. Round | 28/07/2016 | Osmanlıspor FK | - | JK Nõmme Kalju | 1:0 | ||||
3. Round | 04/08/2016 | JK Nõmme Kalju | - | Osmanlıspor FK | 0:2 |