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| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Eintracht Frankfurt | 16 | 9 | 3 | 4 | 38:20 | 18 | 30 |
| 2 |
|
SC Paderborn 07 | 16 | 8 | 4 | 4 | 23:21 | 2 | 28 |
| 3 |
|
SpVgg Greuther Fürth | 16 | 6 | 8 | 2 | 25:13 | 12 | 26 |
| 4 |
|
Fortuna Düsseldorf | 16 | 5 | 8 | 3 | 28:17 | 11 | 23 |
| 5 |
|
FC St. Pauli | 16 | 6 | 5 | 5 | 23:17 | 6 | 23 |
| 6 |
|
TSV 1860 München | 16 | 6 | 4 | 6 | 25:24 | 1 | 22 |
| 7 |
|
Eintracht Braunschweig | 16 | 4 | 7 | 5 | 16:18 | -2 | 19 |
| 8 |
|
FSV Frankfurt | 16 | 4 | 4 | 8 | 23:32 | -9 | 16 |
| 9 |
|
Energie Cottbus | 16 | 4 | 3 | 9 | 12:23 | -11 | 15 |
| 10 |
|
Dynamo Dresden | 16 | 4 | 3 | 9 | 19:31 | -12 | 15 |
| 11 |
|
VfL Bochum | 16 | 3 | 4 | 9 | 17:30 | -13 | 13 |
| 12 |
|
1. FC Union Berlin | 16 | 3 | 4 | 9 | 24:38 | -14 | 13 |
| 13 |
|
Erzgebirge Aue | 16 | 3 | 4 | 9 | 11:31 | -20 | 13 |
| 14 |
|
MSV Duisburg | 16 | 2 | 6 | 8 | 17:27 | -10 | 12 |
| 15 |
|
Hansa Rostock | 16 | 2 | 5 | 9 | 10:26 | -16 | 11 |
| 16 |
|
FC Ingolstadt 04 | 16 | 2 | 5 | 9 | 14:34 | -20 | 11 |
| 17 |
|
Alemannia Aachen | 16 | 1 | 7 | 8 | 13:22 | -9 | 10 |
| 18 |
|
Karlsruher SC | 16 | 1 | 3 | 12 | 11:31 | -20 | 6 |
| Promotion | |
| Playoffs | |
| Playoffs | |
| Relegation |
